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Showing posts with the label Bioinformatics

Traceback In Smith-wateman Algorithm With Affine Gap Penalty

I'm trying to implement the Smith-Waterman algorithm for local sequence alignment using the aff… Read more Traceback In Smith-wateman Algorithm With Affine Gap Penalty

Pyparsing: Extract Variable Length, Variable Content, Variable Whitespace Substring

I need to extract Gleason scores from a flat file of prostatectomy final diagnostic write-ups. Thes… Read more Pyparsing: Extract Variable Length, Variable Content, Variable Whitespace Substring

Why R Library 'ssw' Cannot Find Python Module Installed Via Pip3, Although Pip3 Module Installation Is Satisfied?

I am on Ubuntu 20.04.1 LTS focal, and using R. I want to install in R a library to perform local se… Read more Why R Library 'ssw' Cannot Find Python Module Installed Via Pip3, Although Pip3 Module Installation Is Satisfied?

Python: Multiple Consensus Sequences

starting from a list of dna sequences, I must have in return all the possible consensus (the result… Read more Python: Multiple Consensus Sequences

Finding Common Id's (intersection) In Two Dictionaries

I wrote a piece of code that is supposed to find common intersecting ID's in line[1] in two dif… Read more Finding Common Id's (intersection) In Two Dictionaries

How To Convert A Set Of Dna Sequences Into Protein Sequences Using Python Programming?

I am using python to create a program that converts a set of DNA sequences into amino acid (protein… Read more How To Convert A Set Of Dna Sequences Into Protein Sequences Using Python Programming?

Python: Multiple Consensus Sequences

starting from a list of dna sequences, I must have in return all the possible consensus (the result… Read more Python: Multiple Consensus Sequences