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Showing posts with the label Biopython

Using Search Terms With Biopython To Return Accession Numbers

I am trying to use Biopython (Entrez) with search terms that will return the accession number (and … Read more Using Search Terms With Biopython To Return Accession Numbers

Traceback In Smith-wateman Algorithm With Affine Gap Penalty

I'm trying to implement the Smith-Waterman algorithm for local sequence alignment using the aff… Read more Traceback In Smith-wateman Algorithm With Affine Gap Penalty

Pandas Read Csv Ignore Newline

i have a dataset (for compbio people out there, it's a FASTA) that is littered with newlines, t… Read more Pandas Read Csv Ignore Newline

Calculating The Distance Between Atomic Coordinates

I have a text file as shown below ATOM 920 CA GLN A 203 39.292 -13.354 17.416 1.00 55.7… Read more Calculating The Distance Between Atomic Coordinates

Why Installing Package And Module Not Same In Python?

I want to install the Biopython module. So I used the command sudo apt-get install python-biopython… Read more Why Installing Package And Module Not Same In Python?

How To Convert A Set Of Dna Sequences Into Protein Sequences Using Python Programming?

I am using python to create a program that converts a set of DNA sequences into amino acid (protein… Read more How To Convert A Set Of Dna Sequences Into Protein Sequences Using Python Programming?

Transform Dna Alignment Into Numpy Array Using Biopython

I have several DNA sequences that have been aligned and I would like to keep only the bases that a… Read more Transform Dna Alignment Into Numpy Array Using Biopython